Publications

Haenseler W, Eschment M, Evans B, Brasili M, Figueiro-Silva J, Roethlisberger F, Abidi A, Jackson D, Müller M, Cowley SA, Bachmann-Gagescu R (2025)
Differences in neuronal ciliation rate and ciliary content revealed by systematic imaging-based analysis of hiPSC-derived models across protocols
Front. Cell Dev. Biol. 13 

Haugg A, Frei N, Lutz C, Di Pietro SV, Karipidis II, Brem S (2025)
The structural covariance of reading-related brain regions in adults and children with typical or poor reading skills 
Developmental Cognitive Neuroscience 72, 101522

Speckert A, Payette K, Knirsch W, von Rhein M, Grehten P, Kottke R, ... , Latal B & Jakab A (2025). Altered Connectome Topology in Newborns at Risk for Cognitive Developmental Delay: A Cross‐Etiologic Study Human Brain Mapping, 46(1), e70084. 
 

Aydogan G, Ruff CC (2024)
New Insights from Gene Expression Patterns on the Neurobiological Basis of Risky Behaviour
Nature Mental Health 2, 1273–1274

Bonte M, Brem S (2024)
Unraveling individual differences in learning potential: A dynamic framework for the case of reading development
Developmental Cognitive Neuroscience 66, 101362

Cai L, Argunşah AÖ, Damilou A, Karayannis T (2024)
A nasal chemosensation-dependent critical window for somatosensory development
Science 384, 652-660

Damilou A, Cai L, Argunşah AÖ, Han S, Kanatouris G, Karatsoli M, Hanley O, Gesuita L, Kollmorgen S, Helmchen F, Karayannis T (2024)
Developmental Cajal-Retzius cell death contributes to the maturation of layer 1 cortical inhibition and somatosensory processing
Nature Communications 15, 650

Ehrler M, Speckert A, Kretschmar O, Tuura O’Gorman R, Latal B, Jakab A (2024) The cumulative impact of clinical risk on brain networks and associations with executive function impairments in adolescents with congenital heart diseaseHuman Brain Mapping, e70028

Han S, Helmchen F (2024) Behaviour-relevant top-down cross-modal predictions in mouse neocortex
Nature Neuroscience 27, 298–308

Holfeld A, Schuster D, Sesterhenn F, Stalder P, Haenseler W, ..., Picotti P (2024) Systematic identification of structure-specific protein–protein interactions
 Mol Syst Biol

Ji H, Payette K, Speckert A, ..., Latal B, SPINA BIFIDA STUDY GROUP ZURICH, Jakab A (2024) Thalamic connectivity topography in newborns with spina bifida: association with neurological functional level but not developmental outcome at 2 years Cerebral Cortex bhad438

Kolokotronis K, Suter A-A, Ivanovski I, Frey T, Bahr A, Rauch A, Steindl K (2024) DPF2-related Coffin-Siris syndrome type 7 in two generations 
European Journal of Medical Genetics 69

Nair AG*, Bollmohr N*, Schökle L, Keim J, Melero JMM, Müller M (2024)
Presynaptic quantal size enhancement counteracts post-tetanic release depression 
J Physiol.

Noble AR, Masek M, Hofmann C, Cuoco A, Rusterholz TDS, Ozkoc H, Greter NR, Phelps IG, Vladimirov N, Kollmorgen S, Stoeckli E, Bachmann-Gagescu R (2024)
Shared and unique consequences of Joubert Syndrome gene dysfunction on the zebrafish central nervous system
Biol Open 13(11): bio060421.

Speckert A, Ji H, Payette K, Grehten P, Kottke R, Ackermann S, ... , Jakab A (2024)
OSBA: An open neonatal neuroimaging atlas and template for spina bifida aperta
Data, 9(9), 107

Toyofuku A, Ehrler M, Naef N, Schmid AS, Kretschmar O, Latal B, O'Gorman Tuura R (2024) Heart rate variability and cognitive functions in adolescents with complex congenital heart disease. Pediatr Res 97, pp. 1103–1113

Vladimirov N, Voigt FF, Naert T, Araujo GR, Cai R, Reuss AM, Zhao S, Schmid p, Hildebrand S, Schaettin M, Groos D, Mateos JM, Bethge Ph, Yamamoto T, Aerne V, Roebroeck A, Ertürk A, Aguzzi A, Ziegler U, Stoeckli E, Baudis L, Lienkamp SS, Helmchen F (2024) The Benchtop mesoSPIM: a next-generation open-source light-sheet microscope for large cleared samples  Nature Communications 15, 2679

Voigt FF, Reuss AM, Naert T, Hildebrand S, Schaettin M, Hotz AL, Whitehead L, Bahl A, Neuhauss SC, Roebroeck A, Stoeckli ET, Lienkamp SS, Aguzzi A, Helmchen F (2024). Reflective multi-immersion microscope objectives inspired by the Schmidt telescope. Nature Biotechnology, 42(1), pp.65-71.

Yusifov E, Schaettin M, Dumoulin A, Bachmann-Gagescu R, Stoeckli ET (2024).
The primary cilium gene CPLANE1 is required for peripheral nervous system development. Dev Biol. Epub 2024 Dec 16.

 

Asadollahi R, Delvendahl I, Muff R, ..., Bachmann-Gagescu R, ..., Müller M, Rauch A (2023)
Pathogenic SCN2A variants cause early-stage dysfunction in patient-derived neurons
Human Molecular Genetics 32(13):2192-2204

Barretto-García M, de Hollander G, Grueschow M, Polanía R, Woodford M, Ruff CC (2023) Individual risk attitudes arise from noise in neurocognitive magnitude representations Nature Human Behavior 1-17

Baum S, …, Vladimirov N, Walsworth RL, Watanabe H (2023) Mineral detection of neutrinos and dark matter. A whitepaper  Physics of the Dark Universe 41: 101245 .

Di Pietro SV, Karipidis II, Pleisch G, Brem S (2023) Neurodevelopmental trajectories of letter and speech sound processing from preschool to the end of elementary schoolDevelopmental Cognitive Neuroscience 61:101255

Di Pietro SV, Williger D, Frei N, Lutz C, Coraj S, Schneider C, Stämpfli P, Brem S (2023) Disentangling influences of dyslexia, development, and reading experience on effective brain connectivity in childrenNeuroImage 268:119869

Egger M, Luo W, Cruz-Ochoa N, Lukacsovich D, Varga C, Que L, Maloveczky G, Winterer J, Kaur R, Lukacsovich T, Földy C (2023) Commissural dentate granule cell projections and their rapid formation in the adult brain. PNAS Nexus, 2(4):pgad088.

Frey T, Ivanovski I, Bahr A, Zweier M, Laube J, Luchsinger I, Steindl K, Rauch A (2023) A very mild phenotype in six individuals of a three-generation family with the novel HRAS variant c.176C > G p.(Ala59Gly): Emergence of a new HRAS-related RASopathy distinct from Costello syndrome American Journal of Medical Genetics Part A, 191(8):2074-2082

Hu J, Konovalov A, Ruff CC  (2023)   A unified neural account of contextual and individual differences in altruism eLife 12:e80667 This study used methods developed within the AdaBD project NumRisk

Lewis CM, Hoffmann A, Helmchen F (2023)Linking brain activity across scales with simultaneous opto- and electrophysiology, Neurophotonics 11(3):033403  Review

Payette K, Hongwei L, de Dumast P, Licando E, Ji H, …, Jakab A (2023) Fetal brain tissue annotation and segmentation challenge results Medical Image Analysis 88: 102833

Royall LN, Machado D, Jessberger S, Denoth-Lippuner A (2023) Asymmetric inheritance of centrosomes maintains stem cell properties in human neural progenitor cellseLife12:e83157
This study used methods developed within the AdaBD project on organoids

Voigt F, Reuss A, Naert T, Hildebrand S, Schaettin M,  Hotz A, Whitehead L, Bahl A, Neuhauss S, Roebroeck A, Stoeckli E, Lienkamp S, Aguzzi A, Helmchen F (2023) Reflective multi-immersion microscope objectives inspired by the Schmidt telescope Nature Biotechnology

Wilhelm M*, Sych Y*, Fomins A, Alatorre Warren JL, Lewis CM, Serratosa Capdevila L, Boehringer R, Amadei EA, Grewe BF, O'Connor EC, Hall B, Helmchen F (2023) Striatum-projecting prefrontal cortex neurons support working memory maintenance Nature Communications 14: 7016. (* equal contribution)
AdaBD supported this study with important equipment

Baeriswyl T, Schaettin M, Leoni S, Dumoulin A, Stoeckli ET (2022) Endoglycan Regulates Purkinje Cell Migration by Balancing Cell-Cell Adhesion Frontiers in Neuroscience 16, 894962

Denoth-Lippuner A, Royall LN, Gonzalez-Bohorquez D, Machado D, Jessberger S (2022) Injection and electroporation of plasmid DNA into human cortical organoids. STAR Protocols 3, 101129. 

Diederich B, Müllenbroich C, Vladimirov N, Bowman R, Stirling J, Reynaud EG (2022) CAD we share? Publishing reproducible microscope hardware. Nature Methods 19, 1026–1030 

Fraga-González G, Di Pietro SV, Pleisch G, Walitza S, Brandeis- D, Karipidis Il, Brem S (2022)  Visual Occipito-Temporal N1 Sensitivity to Digits Across Elementary School. Frontiers in Human Neuroscience 16 : 887413. 

Gonzalez-Bohorquez D, Gallego Lopez IM, Jaeger BN, Pfammatter S, Bowers M, Semenkovich CF, Jessberger S (2022)  FASN-dependent de novo lipogenesis is required for brain development. PNAS 119.

Kebiri H, Canales-Rodríguez EJ, Lajous H, de Dumast P, Girard G, Alemán-Gómez Y, Koob M, Jakab A, Bach Cuadra M (2022) Through-Plane Super-Resolution With Autoencoders in Diffusion Magnetic Resonance Imaging of the Developing Human Brain. Front Neurol. 13:827816

Luo W, Cruz-Ochoa NA, Seng C, Egger M, Lukacsovich D, Lukacsovich T and Földy C (2022) Pcdh11x controls target specification of mossy fiber sprouting Frontiers in Neuroscience 16:888362. 

Muttathukunnel P, Frei P, Perry S, Dickman D, Müller M (2022) Rapid homeostatic modulation of transsynaptic nanocolumn rings. PNAS 119. 

Karipidis II, Pleisch G, Di Pietro SV, Fraga-González G, Brem S (2021) Developmental Trajectories of Letter and Speech Sound Integration During Reading Acquisition. Front. Psychol., 16 November 2021. 

Raduner N, Providoli C, Di Pietro S, Schneebeli M, Karipidis II, Casimiro E, Bedi S, Von Rhein M, Raschle NM, Ruff CC, Brem S (2025)
Growing Minds, Integrating Senses: Neural and Computational Insights into Age-related Changes in Audio-Visual and Tactile-Visual Learning in Children
bioRxiv

Bürgi N, Aydogan G, Konovalov A, Ruff CC (2024)
A neural fingerprint of adaptive mentalization
PsyArXiv

Calangiu I, Kollmorgen S, Reppas J, Mante V (2023) Primate pre-arcuate cortex actively maintains persistent representations of saccades from plans to outcomesbioRxiv

Schoenfeld G, Kollmorgen S, Lewis C, Bethge P, Reuss AM, Aguzzi A, Mante V, Helmchen F (2021) Dendritic integration of sensory and reward information facilitates learning.
bioRxiv

Underlined: AdaBD researchers
*: Equal contribution